The PDXB is a small subfamily that includes a group of bacterial enzymes found in ɣ-proteobacteria and Bacteroidetes, including biochemically studied PdxB from E. coli (PDXB_ECOLI). PdxB oxidizes 4-phospho-ᴅ-erythronate to 2-keto-3-hydroxy-4-phosphobutanoate and uses various 2-keto acids as cosubstrates, utilizing NAD as a cofactor. The reaction is the second step in the biosynthesis of pyridoxal phosphate — active form of vitamin B6. Uniquely for 2HADHs, PDXB family proteins have two consecutive proline residues within the βB-αD loop, which are spatially conserved in all the crystal structures of PDXB proteins. Another unique feature of PDXB is presence of a C-terminal dimerization domain.
Accession Protein name Subfamily Organism Kingdom Kinetically characterized substrates Highest efficiency substrate Structures
acb:A1S_2637 erythronate-4-phosphate dehydrogenase PDXB Acinetobacter baumannii ATCC 17978 Bacteria - - -
PDXB_BACTN erythronate-4-phosphate dehydrogenase PDXB Bacteroides thetaiotaomicron Bacteria - - -
PDXB_ECOLI pdxB; erythronate-4-phosphate dehydrogenase (EC:1.1.1.-) PDXB Escherichia coli K-12 MG1655 Bacteria alpha-ketoglutarate, pyruvate, 4-phospho-D-erythronate, oxaloacetate 4-phospho-D-erythronate PMID:20831184
A6TC06_KLEP7 pdxB; erythronate-4-phosphate dehydrogenase PDXB Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Bacteria - - -
PDXB_LEGPH erythronate-4-phosphate dehydrogenase (EC:1.1.1.-) PDXB Legionella pneumophila subsp. pneumophila Philadelphia 1 Bacteria - - -
D4GJ89_PANAM pdxB; PdxB PDXB Pantoea ananatis LMG 20103 Bacteria - - -
PDXB_PSEAE pdxB; erythronate-4-phosphate dehydrogenase PDXB Pseudomonas aeruginosa PAO1 Bacteria - - - 2O4C (NAD, tartaric acid) PMID:17217963
PDXB_SALTY pdxB; erythronate-4-phosphate dehydrogenase (EC:1.1.1.-) PDXB Salmonella enterica subsp. enterica serovar Typhi CT18 Bacteria - - - 3OET (NAD)
PDXB_SODGM erythronate-4-phosphate dehydrogenase PDXB Sodalis glossinidius (Glossina spp.) Bacteria - - -
PDXB_VIBCH erythronate-4-phosphate dehydrogenase PDXB Vibrio cholerae O1 biovar El Tor N16961 Bacteria - - - 5DT9 (NAD)
A0A0B6NWJ3_YERPE pdxB; D-isomer specific 2-hydroxyacid dehydrogenase PDXB Yersinia pestis CO92 (biovar Orientalis) Bacteria - - -