Formate dehydrogenases (FDHs) represent a highly conserved subfamily of enzymes, characterized by a scattered taxonomic distribution. They are present in various bacteria (i.e., Firmicutes and proteobacteria) and eukaryotes (plants, yeasts, and fungi), and catalyze the NAD+-dependent oxidation of formate to carbon dioxide. The aspartate residue that defines the specificity towards NAD+ is conserved within the subfamily. FDHs play a pivotal role in methanol utilization in methylotrophic microorganisms (yeast and bacteria), supplying them with energy and reducing equivalents. As opposed to microbiological FDHs which function in cytoplasm, plant FDHs localize to the mitochondria and are key players in the cell stress response caused by both exogenic and endogenic factors.
Accession | Protein name | Subfamily | Organism | Kingdom | Kinetically characterized substrates | Highest efficiency substrate | Structures |
---|---|---|---|---|---|---|---|
FDH_ARATH | FDH; formate dehydrogenase | FDH | Arabidopsis thaliana (thale cress) | Eukaryotes | formate | formate 10.1016/S0176-1617(00)80186-8 | 3N7U (NAD, azide ion) 3JTM 3NAQ |
ang:ANI_1_76134 | An15g00410; formate dehydrogenase | FDH | Aspergillus niger | Eukaryotes | - | - - | |
Q7VY50_BORPE | formate dehydrogenase (EC:1.2.2.1) | FDH | Bordetella pertussis Tohama I | Bacteria | - | - - | |
FDH_CANBO | Formate dehydrogenase | FDH | Candida boidinii | Eukaryotes | formate | formate PMID:27100912 | 2FSS PMID:17525463 2J6I PMID:17525463 |
A0A0A1EQY0_CANBO | Formate dehydrogenase | FDH | Candida boidinii | Eukaryotes | - | - - | 5DN9 (NAD, azide ion) PMID:27100912 5DNA PMID:27100912 |
FDH_CHATD | Formate dehydrogenase | FDH | Chaetomium thermophilum | Eukaryotes | formate | formate 10.1016/j.molcatb.2015.09.014 | |
G8NVB5_GRAMM | Formate dehydrogenase | FDH | Granulicella mallensis | Bacteria | - | - - | 4XYB (NADP, azide ion) PMID:26104866 4XYE (NAD) PMID:26104866 4XYG PMID:26104866 |
Q5ZYS8_LEGPH | formate dehydrogenase (EC:1.2.2.1) | FDH | Legionella pneumophila subsp. pneumophila Philadelphia 1 | Bacteria | - | - - | |
O08375_MORSP | Formate dehydrogenase | FDH | Moraxella sp. | Bacteria | - | - - | 2GSD (NAD, azide ion) PMID:19966418 3FN4 PMID:19966418 |
Q0DC43_ORYSJ | Os06g0486800 | FDH | Oryza sativa japonica (Japanese rice) (RefSeq) | Eukaryotes | - | - - | |
FDH2_ORYSJ | Os06g0486900 | FDH | Oryza sativa japonica (Japanese rice) (RefSeq) | Eukaryotes | - | - - | |
FDH_PSESR | Formate dehydrogenase | FDH | Pseudomonas sp. | Bacteria | formate | formate PMID:8484798 | 2GO1 2GUG (Formic acid) 2NAC PMID:8114093 2NAD (NAD, azide ion) PMID:8114093 |
FDH1_YEAST | FDH1; formate dehydrogenase (NAD+) (EC:1.2.1.2) | FDH | Saccharomyces cerevisiae (budding yeast) | Eukaryotes | formate | formate PMID:12144528 | |
Q930E7_RHIME | formate dehydrogenase (EC:1.2.2.1) | FDH | Sinorhizobium meliloti 1021 | Bacteria | - | - - | |
sau:SA0171 | fdh; formate dehydrogenase (EC:1.2.2.1) | FDH | Staphylococcus aureus subsp. aureus N315 (MRSA/VSSA) | Bacteria | - | - - | |
Q76EB7_9PROT | Formate dehydrogenase | FDH | Thiobacillus sp. KNK65MA | Bacteria | - | - - | 3WR5 (NAD) |